Detailed information of SNP:
|
SNP ID:
sf0431626301(Gbrowse)
Chromosome: chr04 Position: 31626301 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 77.06% | 22.94% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 497 | 60.56% | 39.44% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 76.42% | 23.58% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431626301 | G->A | INTERGENIC | None |