Detailed information of SNP:
|
SNP ID:
sf0431626763(Gbrowse)
Chromosome: chr04 Position: 31626763 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1178 | 61.63% | 38.37% |
| All Indica | 610 | 63.11% | 36.89% |
| All Japonica | 456 | 61.40% | 38.60% |
| Aus | 63 | 57.14% | 42.86% |
| Indica I | 299 | 63.55% | 36.45% |
| Indica II | 146 | 66.44% | 33.56% |
| Indica Intermediate | 165 | 59.39% | 40.61% |
| Temperate Japonica | 305 | 80.00% | 20.00% |
| Tropical Japonica | 87 | 19.54% | 80.46% |
| Japonica Intermediate | 64 | 29.69% | 70.31% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 35 | 65.71% | 34.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431626763 | G->T | INTERGENIC | None |