Detailed information of SNP:
|
SNP ID:
sf0431638478(Gbrowse)
Chromosome: chr04 Position: 31638478 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 62.83% | 37.17% |
| All Indica | 795 | 72.33% | 27.67% |
| All Japonica | 497 | 45.27% | 54.73% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 58.02% | 41.98% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 335 | 29.25% | 70.75% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431638478 | A->G | INTERGENIC | None |