Detailed information of SNP:
|
SNP ID:
sf0431645992(Gbrowse)
Chromosome: chr04 Position: 31645992 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 53.72% | 46.28% |
| All Indica | 792 | 56.94% | 43.06% |
| All Japonica | 497 | 45.07% | 54.93% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 373 | 48.26% | 51.74% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 207 | 58.94% | 41.06% |
| Temperate Japonica | 335 | 28.96% | 71.04% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431645992 | C->T | INTERGENIC | None |