Detailed information of SNP:
|
SNP ID:
sf0431655100(Gbrowse)
Chromosome: chr04 Position: 31655100 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.61% | 47.39% |
| All Indica | 798 | 56.27% | 43.73% |
| All Japonica | 497 | 42.05% | 57.95% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 57.33% | 42.67% |
| Indica II | 212 | 49.53% | 50.47% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 24.48% | 75.52% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431655100 | T->C | LOC_Os04g53470(LOC_Os04g53470.1) | INTRON |