Detailed information of SNP:



SNP ID: sf0431655649(Gbrowse)

Chromosome: chr04

Position: 31655649
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 97.11% 2.89%
All Indica799 95.12% 4.88%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I375 99.47% 0.53%
Indica II213 85.92% 14.08%
Indica Intermediate211 96.68% 3.32%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0431655649 T->C LOC_Os04g53470(LOC_Os04g53470.1) INTRON