Detailed information of SNP:
|
SNP ID:
sf0431666881(Gbrowse)
Chromosome: chr04 Position: 31666881 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 81.96% | 18.04% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 67.81% | 32.19% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 86.27% | 13.73% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431666881 | G->A | INTERGENIC | None |