Detailed information of SNP:
|
SNP ID:
sf0431672082(Gbrowse)
Chromosome: chr04 Position: 31672082 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 84.12% | 15.88% |
| All Indica | 798 | 81.08% | 18.92% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 73.81% | 26.19% |
| Temperate Japonica | 335 | 91.04% | 8.96% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431672082 | G->A | LOC_Os04g53496(LOC_Os04g53496.1) | Synonymous |