Detailed information of SNP:
|
SNP ID:
sf0431672851(Gbrowse)
Chromosome: chr04 Position: 31672851 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 52.21% | 47.79% |
| All Indica | 767 | 53.32% | 46.68% |
| All Japonica | 492 | 58.94% | 41.06% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 57.33% | 42.67% |
| Indica II | 190 | 46.84% | 53.16% |
| Indica Intermediate | 202 | 51.98% | 48.02% |
| Temperate Japonica | 330 | 75.45% | 24.55% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431672851 | A->G | LOC_Os04g53496(LOC_Os04g53496.1) | Non-Synonymous SNP |