Detailed information of SNP:
|
SNP ID:
sf0431673619(Gbrowse)
Chromosome: chr04 Position: 31673619 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 65.70% | 34.30% |
| All Indica | 797 | 78.42% | 21.58% |
| All Japonica | 494 | 38.87% | 61.13% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 333 | 18.92% | 81.08% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431673619 | G->A | LOC_Os04g53496(LOC_Os04g53496.1) | Non-Synonymous SNP |