Detailed information of SNP:
|
SNP ID:
sf0431681277(Gbrowse)
Chromosome: chr04 Position: 31681277 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 76.01% | 23.99% |
| All Indica | 798 | 61.65% | 38.35% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 375 | 64.00% | 36.00% |
| Indica II | 213 | 49.77% | 50.23% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431681277 | T->C | LOC_Os04g53502(LOC_Os04g53502.1) | INTRON |