Detailed information of SNP:
|
SNP ID:
sf0431682676(Gbrowse)
Chromosome: chr04 Position: 31682676 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 81.38% | 18.62% |
| All Indica | 788 | 93.02% | 6.98% |
| All Japonica | 492 | 70.33% | 29.67% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 372 | 95.43% | 4.57% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 203 | 89.16% | 10.84% |
| Temperate Japonica | 334 | 87.13% | 12.87% |
| Tropical Japonica | 92 | 33.70% | 66.30% |
| Japonica Intermediate | 66 | 36.36% | 63.64% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431682676 | G->A | INTERGENIC | None |