Detailed information of SNP:
|
SNP ID:
sf0431694659(Gbrowse)
Chromosome: chr04 Position: 31694659 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 68.91% | 31.09% |
| All Indica | 797 | 78.67% | 21.33% |
| All Japonica | 492 | 48.17% | 51.83% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 75.60% | 24.40% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 334 | 32.63% | 67.37% |
| Tropical Japonica | 90 | 83.33% | 16.67% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431694659 | G->A | INTERGENIC | None |