Detailed information of SNP:
|
SNP ID:
sf0431697111(Gbrowse)
Chromosome: chr04 Position: 31697111 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 75.62% | 24.38% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 41.05% | 58.95% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431697111 | A->C | LOC_Os04g53520(LOC_Os04g53520.1) | UTR_5_PRIME |