Detailed information of SNP:



SNP ID: sf0431697111(Gbrowse)

Chromosome: chr04

Position: 31697111
Major allele: C

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1419 75.62% 24.38%
All Indica799 94.49% 5.51%
All Japonica497 41.05% 58.95%
Aus67 98.51% 1.49%
Indica I375 89.87% 10.13%
Indica II213 99.06% 0.94%
Indica Intermediate211 98.10% 1.90%
Temperate Japonica335 21.19% 78.81%
Tropical Japonica94 88.30% 11.70%
Japonica Intermediate68 73.53% 26.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0431697111 A->C LOC_Os04g53520(LOC_Os04g53520.1) UTR_5_PRIME