Detailed information of SNP:
|
SNP ID:
sf0431704395(Gbrowse)
Chromosome: chr04 Position: 31704395 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1341 | 80.54% | 19.46% |
| All Indica | 775 | 92.90% | 7.10% |
| All Japonica | 445 | 55.96% | 44.04% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 358 | 91.62% | 8.38% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 287 | 40.07% | 59.93% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431704395 | T->C | LOC_Os04g53520(LOC_Os04g53520.1) | INTRON |