Detailed information of SNP:
|
SNP ID:
sf0431704938(Gbrowse)
Chromosome: chr04 Position: 31704938 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1266 | 53.48% | 46.52% |
| All Indica | 667 | 21.89% | 78.11% |
| All Japonica | 481 | 96.26% | 3.74% |
| Aus | 64 | 68.75% | 31.25% |
| Indica I | 348 | 19.25% | 80.75% |
| Indica II | 151 | 24.50% | 75.50% |
| Indica Intermediate | 168 | 25.00% | 75.00% |
| Temperate Japonica | 322 | 99.07% | 0.93% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431704938 | C->T | LOC_Os04g53520(LOC_Os04g53520.1) | INTRON |