Detailed information of SNP:
|
SNP ID:
sf0431708536(Gbrowse)
Chromosome: chr04 Position: 31708536 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 54.81% | 45.19% |
| All Indica | 776 | 63.66% | 36.34% |
| All Japonica | 496 | 35.69% | 64.31% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 359 | 63.51% | 36.49% |
| Indica II | 212 | 59.43% | 40.57% |
| Indica Intermediate | 205 | 68.29% | 31.71% |
| Temperate Japonica | 335 | 15.82% | 84.18% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431708536 | A->G | LOC_Os04g53520(LOC_Os04g53520.1) | INTRON |