Detailed information of SNP:
|
SNP ID:
sf0431709299(Gbrowse)
Chromosome: chr04 Position: 31709299 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.92% | 43.08% |
| All Indica | 797 | 57.34% | 42.66% |
| All Japonica | 497 | 62.58% | 37.42% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 375 | 58.67% | 41.33% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 209 | 46.89% | 53.11% |
| Temperate Japonica | 335 | 80.90% | 19.10% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431709299 | A->G | LOC_Os04g53520(LOC_Os04g53520.1) | INTRON |