Detailed information of SNP:
|
SNP ID:
sf0431709664(Gbrowse)
Chromosome: chr04 Position: 31709664 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.18% | 24.82% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 40.85% | 59.15% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 20.90% | 79.10% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431709664 | T->C | INTERGENIC | None |