Detailed information of SNP:
|
SNP ID:
sf0431720559(Gbrowse)
Chromosome: chr04 Position: 31720559 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 93.65% | 6.35% |
| All Indica | 797 | 92.85% | 7.15% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431720559 | G->A | LOC_Os04g53540(LOC_Os04g53540.1) | INTRON |
| sf0431720559 | G->A | LOC_Os04g53540(LOC_Os04g53540.3) | INTRON |
| sf0431720559 | G->A | LOC_Os04g53540(LOC_Os04g53540.2) | INTRON |
| sf0431720559 | G->A | LOC_Os04g53540(LOC_Os04g53540.4) | INTRON |