Detailed information of SNP:
|
SNP ID:
sf0431721795(Gbrowse)
Chromosome: chr04 Position: 31721795 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 78.45% | 21.55% |
| All Indica | 796 | 89.57% | 10.43% |
| All Japonica | 496 | 67.34% | 32.66% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 85.07% | 14.93% |
| Tropical Japonica | 93 | 27.96% | 72.04% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431721795 | T->C | LOC_Os04g53540(LOC_Os04g53540.1) | UTR_5_PRIME |
| sf0431721795 | T->C | LOC_Os04g53540(LOC_Os04g53540.3) | INTRON |
| sf0431721795 | T->C | LOC_Os04g53540(LOC_Os04g53540.2) | UTR_5_PRIME |