Detailed information of SNP:
|
SNP ID:
sf0431722740(Gbrowse)
Chromosome: chr04 Position: 31722740 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 68.22% | 31.78% |
| All Indica | 797 | 82.43% | 17.57% |
| All Japonica | 496 | 39.72% | 60.28% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 85.25% | 14.75% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 19.70% | 80.30% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431722740 | G->A | INTERGENIC | None |