Detailed information of SNP:
|
SNP ID:
sf0431727898(Gbrowse)
Chromosome: chr04 Position: 31727898 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 79.70% | 20.30% |
| All Indica | 797 | 96.86% | 3.14% |
| All Japonica | 495 | 48.48% | 51.52% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 333 | 31.53% | 68.47% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431727898 | T->C | INTERGENIC | None |