Detailed information of SNP:
|
SNP ID:
sf0431729961(Gbrowse)
Chromosome: chr04 Position: 31729961 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 56.67% | 43.33% |
| All Indica | 785 | 61.15% | 38.85% |
| All Japonica | 491 | 56.21% | 43.79% |
| Aus | 63 | 11.11% | 88.89% |
| Indica I | 372 | 75.00% | 25.00% |
| Indica II | 210 | 47.14% | 52.86% |
| Indica Intermediate | 203 | 50.25% | 49.75% |
| Temperate Japonica | 333 | 72.07% | 27.93% |
| Tropical Japonica | 90 | 22.22% | 77.78% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431729961 | A->G | INTERGENIC | None |