Detailed information of SNP:
|
SNP ID:
sf0431735044(Gbrowse)
Chromosome: chr04 Position: 31735044 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 73.97% | 26.03% |
| All Indica | 793 | 81.34% | 18.66% |
| All Japonica | 495 | 57.58% | 42.42% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 206 | 78.16% | 21.84% |
| Temperate Japonica | 334 | 46.11% | 53.89% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431735044 | C->T | INTERGENIC | None |