Detailed information of SNP:
|
SNP ID:
sf0431736814(Gbrowse)
Chromosome: chr04 Position: 31736814 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 72.93% | 27.07% |
| All Indica | 796 | 55.28% | 44.72% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 42.93% | 57.07% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 209 | 62.20% | 37.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431736814 | G->A | INTERGENIC | None |