Detailed information of SNP:
|
SNP ID:
sf0431773160(Gbrowse)
Chromosome: chr04 Position: 31773160 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 63.42% | 36.58% |
| All Indica | 785 | 78.85% | 21.15% |
| All Japonica | 497 | 45.27% | 54.73% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 203 | 76.85% | 23.15% |
| Indica Intermediate | 207 | 64.73% | 35.27% |
| Temperate Japonica | 335 | 55.22% | 44.78% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431773160 | C->T | LOC_Os04g53606(LOC_Os04g53606.1) | Non-Synonymous SNP |