Detailed information of SNP:
|
SNP ID:
sf0431837719(Gbrowse)
Chromosome: chr04 Position: 31837719 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 91.98% | 8.02% |
| All Indica | 795 | 86.42% | 13.58% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 211 | 66.35% | 33.65% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431837719 | T->C | INTERGENIC | None |