Detailed information of SNP:
|
SNP ID:
sf0431838686(Gbrowse)
Chromosome: chr04 Position: 31838686 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 85.53% | 14.47% |
| All Indica | 798 | 77.07% | 22.93% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 74.40% | 25.60% |
| Indica II | 212 | 79.25% | 20.75% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431838686 | G->A | INTERGENIC | None |