Detailed information of SNP:
|
SNP ID:
sf0431840443(Gbrowse)
Chromosome: chr04 Position: 31840443 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 91.63% | 8.37% |
| All Indica | 790 | 85.57% | 14.43% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 367 | 88.83% | 11.17% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431840443 | A->G | LOC_Os04g53750(LOC_Os04g53750.4) | INTRON |
| sf0431840443 | A->G | LOC_Os04g53750(LOC_Os04g53750.1) | INTRON |
| sf0431840443 | A->G | LOC_Os04g53750(LOC_Os04g53750.3) | INTRON |