Detailed information of SNP:
|
SNP ID:
sf0431853012(Gbrowse)
Chromosome: chr04 Position: 31853012 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.12% | 42.88% |
| All Indica | 798 | 31.70% | 68.30% |
| All Japonica | 497 | 93.36% | 6.64% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 16.00% | 84.00% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 210 | 36.67% | 63.33% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431853012 | T->C | LOC_Os04g53760(LOC_Os04g53760.2) | Non-Synonymous SNP |
| sf0431853012 | T->C | LOC_Os04g53760(LOC_Os04g53760.1) | Non-Synonymous SNP |