Detailed information of SNP:
|
SNP ID:
sf0431855829(Gbrowse)
Chromosome: chr04 Position: 31855829 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 53.65% | 46.35% |
| All Indica | 796 | 33.67% | 66.33% |
| All Japonica | 496 | 80.65% | 19.35% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 373 | 29.22% | 70.78% |
| Indica II | 212 | 41.51% | 58.49% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431855829 | A->T | INTERGENIC | None |