Detailed information of SNP:
|
SNP ID:
sf0431865243(Gbrowse)
Chromosome: chr04 Position: 31865243 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 97.32% | 2.68% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 495 | 93.54% | 6.46% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431865243 | G->T | LOC_Os04g53780(LOC_Os04g53780.2) | INTRON |
| sf0431865243 | G->T | LOC_Os04g53780(LOC_Os04g53780.1) | INTRON |