Detailed information of SNP:
|
SNP ID:
sf0431892560(Gbrowse)
Chromosome: chr04 Position: 31892560 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 60.17% | 39.83% |
| All Indica | 798 | 62.28% | 37.72% |
| All Japonica | 495 | 53.94% | 46.06% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 69.25% | 30.75% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 333 | 45.35% | 54.65% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431892560 | T->G | INTERGENIC | None |