Detailed information of SNP:
|
SNP ID:
sf0431958873(Gbrowse)
Chromosome: chr04 Position: 31958873 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 63.84% | 36.16% |
| All Indica | 797 | 48.18% | 51.82% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 34.40% | 65.60% |
| Indica II | 212 | 64.15% | 35.85% |
| Indica Intermediate | 210 | 56.67% | 43.33% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431958873 | G->T | INTERGENIC | None |