Detailed information of SNP:
|
SNP ID:
sf0431959388(Gbrowse)
Chromosome: chr04 Position: 31959388 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 62.52% | 37.48% |
| All Indica | 796 | 46.98% | 53.02% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 33.42% | 66.58% |
| Indica II | 212 | 64.15% | 35.85% |
| Indica Intermediate | 210 | 53.81% | 46.19% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431959388 | C->G | INTERGENIC | None |