Detailed information of SNP:
|
SNP ID:
sf0431973483(Gbrowse)
Chromosome: chr04 Position: 31973483 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 88.68% | 11.32% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 493 | 87.02% | 12.98% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 88.62% | 11.38% |
| Tropical Japonica | 91 | 76.92% | 23.08% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431973483 | C->T | INTERGENIC | None |