Detailed information of SNP:
|
SNP ID:
sf0431976759(Gbrowse)
Chromosome: chr04 Position: 31976759 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 62.15% | 37.85% |
| All Indica | 798 | 88.97% | 11.03% |
| All Japonica | 494 | 15.99% | 84.01% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 334 | 10.78% | 89.22% |
| Tropical Japonica | 92 | 40.22% | 59.78% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431976759 | T->C | INTERGENIC | None |