Detailed information of SNP:
|
SNP ID:
sf0431981411(Gbrowse)
Chromosome: chr04 Position: 31981411 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 90.69% | 9.31% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431981411 | G->C | INTERGENIC | None |