Detailed information of SNP:
|
SNP ID:
sf0431982183(Gbrowse)
Chromosome: chr04 Position: 31982183 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 95.05% | 4.95% |
| All Indica | 789 | 99.75% | 0.25% |
| All Japonica | 465 | 95.48% | 4.52% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 365 | 99.45% | 0.55% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 307 | 99.02% | 0.98% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431982183 | C->T | LOC_Os04g53990(LOC_Os04g53990.1) | INTRON |