Detailed information of SNP:
|
SNP ID:
sf0432019106(Gbrowse)
Chromosome: chr04 Position: 32019106 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 64.32% | 35.68% |
| All Indica | 798 | 92.98% | 7.02% |
| All Japonica | 497 | 25.55% | 74.45% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432019106 | C->T | INTERGENIC | None |