Detailed information of SNP:
|
SNP ID:
sf0432020984(Gbrowse)
Chromosome: chr04 Position: 32020984 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 93.31% | 6.69% |
| All Indica | 795 | 99.25% | 0.75% |
| All Japonica | 489 | 93.46% | 6.54% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 371 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 88 | 77.27% | 22.73% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432020984 | C->T | INTERGENIC | None |