Detailed information of SNP:
|
SNP ID:
sf0432027119(Gbrowse)
Chromosome: chr04 Position: 32027119 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 58.56% | 41.44% |
| All Indica | 780 | 87.05% | 12.95% |
| All Japonica | 489 | 22.49% | 77.51% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 363 | 85.67% | 14.33% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 205 | 82.44% | 17.56% |
| Temperate Japonica | 333 | 6.91% | 93.09% |
| Tropical Japonica | 93 | 59.14% | 40.86% |
| Japonica Intermediate | 63 | 50.79% | 49.21% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432027119 | T->C | LOC_Os04g54050(LOC_Os04g54050.1) | INTRON |