Detailed information of SNP:
|
SNP ID:
sf0432027530(Gbrowse)
Chromosome: chr04 Position: 32027530 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 71.94% | 28.06% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 496 | 33.67% | 66.33% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 10.15% | 89.85% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432027530 | A->G | LOC_Os04g54050(LOC_Os04g54050.1) | INTRON |