Detailed information of SNP:
|
SNP ID:
sf0432027608(Gbrowse)
Chromosome: chr04 Position: 32027608 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 71.26% | 28.74% |
| All Indica | 796 | 93.09% | 6.91% |
| All Japonica | 495 | 32.93% | 67.07% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 373 | 90.35% | 9.65% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 8.98% | 91.02% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432027608 | A->G | LOC_Os04g54050(LOC_Os04g54050.1) | INTRON |