Detailed information of SNP:
|
SNP ID:
sf0432028191(Gbrowse)
Chromosome: chr04 Position: 32028191 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 95.49% | 4.51% |
| All Indica | 793 | 96.60% | 3.40% |
| All Japonica | 480 | 93.54% | 6.46% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 209 | 93.78% | 6.22% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 79 | 73.42% | 26.58% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432028191 | G->A | LOC_Os04g54050(LOC_Os04g54050.1) | Non-Synonymous SNP |