Detailed information of SNP:
|
SNP ID:
sf0432038335(Gbrowse)
Chromosome: chr04 Position: 32038335 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 84.69% | 15.31% |
| All Indica | 799 | 92.74% | 7.26% |
| All Japonica | 497 | 79.48% | 20.52% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432038335 | A->G | LOC_Os04g54070(LOC_Os04g54070.1) | INTRON |