Detailed information of SNP:
|
SNP ID:
sf0432055192(Gbrowse)
Chromosome: chr04 Position: 32055192 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.24% | 46.76% |
| All Indica | 798 | 87.59% | 12.41% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432055192 | G->A | LOC_Os04g54110(LOC_Os04g54110.1) | INTRON |