Detailed information of SNP:



SNP ID: sf0432055192(Gbrowse)

Chromosome: chr04

Position: 32055192
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1418 53.24% 46.76%
All Indica798 87.59% 12.41%
All Japonica497 4.43% 95.57%
Aus67 22.39% 77.61%
Indica I375 90.13% 9.87%
Indica II212 85.85% 14.15%
Indica Intermediate211 84.83% 15.17%
Temperate Japonica335 0.60% 99.40%
Tropical Japonica94 20.21% 79.79%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 45.24% 54.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0432055192 G->A LOC_Os04g54110(LOC_Os04g54110.1) INTRON