Detailed information of SNP:
|
SNP ID:
sf0432077936(Gbrowse)
Chromosome: chr04 Position: 32077936 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 97.47% | 2.53% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 465 | 92.90% | 7.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 95.87% | 4.13% |
| Tropical Japonica | 84 | 83.33% | 16.67% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432077936 | G->A | LOC_Os04g54150(LOC_Os04g54150.1) | Synonymous |