Detailed information of SNP:
|
SNP ID:
sf0432082739(Gbrowse)
Chromosome: chr04 Position: 32082739 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 91.39% | 8.61% |
| All Indica | 794 | 96.60% | 3.40% |
| All Japonica | 492 | 89.63% | 10.37% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 208 | 94.23% | 5.77% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 334 | 96.41% | 3.59% |
| Tropical Japonica | 91 | 65.93% | 34.07% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432082739 | G->A | LOC_Os04g54160(LOC_Os04g54160.1) | Non-Synonymous SNP |